Multiple found with demo server version 0.6 (tested in FF)
1. Geography filter is not displaying correctly
2. Unchecking color legend checkbox does not remove the color legend window
3. In Map Tool, checking and unchecking the "Use KeyType..." box does not produce any difference. In fact, state labels are incorrect.
4. Related to 3, chose a key column from the Key Column tab and it broke all visualization - they no longer display values/colors. The option to choose a key column seems out of place there (should it be in the Map tool dropdown?)
5. Table tool no longer displays any column names
I think the red indicator box should turn to green (and perhaps display a message like "Run analysis") as soon as all the necessary analysis options are filled in, not after running.